Protein Info for CA264_21455 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 437 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details PF19335: HMBD" amino acids 33 to 59 (27 residues), 52.8 bits, see alignment (E = 4.5e-18) PF16576: HlyD_D23" amino acids 98 to 218 (121 residues), 104.4 bits, see alignment E=7.9e-34 amino acids 264 to 350 (87 residues), 55.6 bits, see alignment E=6.9e-19 PF13437: HlyD_3" amino acids 265 to 347 (83 residues), 41.1 bits, see alignment E=3.8e-14

Best Hits

KEGG orthology group: None (inferred from 49% identity to sli:Slin_6878)

Predicted SEED Role

"Probable Co/Zn/Cd efflux system membrane fusion protein" in subsystem Cobalt-zinc-cadmium resistance

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YYU9 at UniProt or InterPro

Protein Sequence (437 amino acids)

>CA264_21455 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKRYLNILFLALAVLVAACKGEDHKHAEGDTEYTCPMHPQIVQNKPGTCPICGMDLVPKA
AHGDGVEITEDLAFLLKPTNSTVIASIATTKPEQKTAEASIKMDGIITYDPRRVYSVPAR
VGGRIEKLFVKYNFQPILKGQKLMEVYSPELITAQKELLYLVQSAPEDKQLIQAARQKLQ
YLGATSEQINRLISRGEESYTFALYSPYDGYVIDLNATAPAATASMAAAPAASAGGGMDA
MGGGSAATAVAPATAAAAPAGQATQLREGMYVTVGQPLVRVVNAEQLWAEFNVPAGEMSS
LAKGSPVLITFPQLPGEKLEAKVDFFQPFFDEGENFAKVRVYLPRDNRQVMVGQLVSAEA
TYKTEAALWVPKAAVLDIGTRTVAFRKVNGVFEPVAVTTGAAAGNEIQISSGLKQTDVIA
TNAQFLVDSESFIKVNN