Protein Info for CA264_21415 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: IS256 family transposase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 401 PF00872: Transposase_mut" amino acids 2 to 379 (378 residues), 362.4 bits, see alignment E=2.7e-112 PF10551: MULE" amino acids 184 to 260 (77 residues), 27.9 bits, see alignment E=2.6e-10

Best Hits

Swiss-Prot: 40% identical to Y4PO_SINFN: Probable transposase for insertion sequence element ISRM3-like (NGR_a01970) from Sinorhizobium fredii (strain NBRC 101917 / NGR234)

KEGG orthology group: None (inferred from 62% identity to zpr:ZPR_0735)

Predicted SEED Role

"Mobile element protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YZ04 at UniProt or InterPro

Protein Sequence (401 amino acids)

>CA264_21415 IS256 family transposase (Pontibacter actiniarum KMM 6156, DSM 19842)
MISKDDILNSEFLKQFKDSKDFSSFMEELYVRGTEKMLEGELDHHLGYGKHSPEGRNSGN
SRNGKTSKKLKSKYGEVEIEVPRDRAGTFEPVLVPKRRGLAEGIEELVISLYAKGMSTRD
IEEQLREIYGFNLSESTVSTITHRVSEDIAEWQQRPLERLYCIVWMDGIAFKVRHSGKVI
SKTVYLAVGLNSEGRKELLGMWLSESESAAFWVGVLTDIRARGVEDILITCTDNLSGFTQ
GIRSVFPEAATQVCVVHQIRNSCRYVVWRDKKAFAADMKAIYNAPTREVAAVELERFEQA
WGSKYPYAVKSWRANWEELTVFFDFPLEIRRIIYTTNLIENLNGKIRKYTKGKGAFPDDG
SVRKAVFLALREITKKWTQPQRNWGLIMNQFVTLYPERCRF