Protein Info for CA264_21025 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: conjugative transposon protein TraN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 262 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR03780: Bacteroides conjugative transposon TraN protein" amino acids 18 to 261 (244 residues), 225.1 bits, see alignment E=5e-71 PF13595: DUF4138" amino acids 27 to 261 (235 residues), 194.6 bits, see alignment E=9.2e-62

Best Hits

KEGG orthology group: None (inferred from 53% identity to bfr:BFp0017)

Predicted SEED Role

"Conjugative transposon protein TraN" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YYL1 at UniProt or InterPro

Protein Sequence (262 amino acids)

>CA264_21025 conjugative transposon protein TraN (Pontibacter actiniarum KMM 6156, DSM 19842)
MKKLLLLYVLFALLFSASAQDSLQVVHVHESISTHIVSPEPIQYVDISTDDVAGDIPVAN
ILRVKPKHGGAKPGIITIVGERFLVQYKLAYSRADRADTEVRIDPTQVDDYLNPAVAMSR
EDMARFALLALQRKPQFNSVNSKGQGMLAKLNNIYTVGDYFFIDLSLRNDTNIPYTIDQI
RFKIEDKKVVKATNFQQVEMQPTFQLYDTGSFKRKYRNVFVFKKFTFPEEKVFNIEVAEE
QISGRTISLKIDYSDILHADTL