Protein Info for CA264_21020 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: conjugative transposon protein TraM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details TIGR03779: Bacteroides conjugative transposon TraM protein" amino acids 6 to 390 (385 residues), 196.2 bits, see alignment E=5.7e-62 PF12508: Transposon_TraM" amino acids 206 to 382 (177 residues), 169.7 bits, see alignment E=3e-54

Best Hits

Predicted SEED Role

"Conjugative transposon protein TraM" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YYP3 at UniProt or InterPro

Protein Sequence (392 amino acids)

>CA264_21020 conjugative transposon protein TraM (Pontibacter actiniarum KMM 6156, DSM 19842)
MKRINFRHPRYAIPLIILPFLVLLNYLWLDMTPAATATQTKVELNETTALNTSLPDANLR
KRDMKDKFSAFQDEFKYKTDYSAMQEIGQDRVDPKDIAYGSVYTEEERRMLDSLNNRILS
DQQPEGFMERVSQRQRLSPERYAPATASVPGRSTRPMRKVESAYENEMRLFREQMMFIDS
LSRVGEDPVPSRRDAQPKAHAPASEKQEPTPLPVTKYRNTNKAFFNTITADGEEQFIRAI
LDEGLKVMQGGRIRIRLLDDIYVRDYEIKKGSYLYGTVSGFSAQRIEIAIRSILYGNQII
PVDLSIYDNDGLAGLYVPDSQFRDFTKELAGNVSSGQTLTFEDSPDNASQMLYSMLERVS
QTTTRAAGKAIRKNKAKLKYNTIVYLIDSKAP