Protein Info for CA264_20810 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 transmembrane" amino acids 44 to 66 (23 residues), see Phobius details amino acids 74 to 93 (20 residues), see Phobius details amino acids 124 to 148 (25 residues), see Phobius details amino acids 169 to 191 (23 residues), see Phobius details amino acids 198 to 218 (21 residues), see Phobius details amino acids 238 to 260 (23 residues), see Phobius details PF01226: Form_Nir_trans" amino acids 25 to 262 (238 residues), 176 bits, see alignment E=4.5e-56

Best Hits

KEGG orthology group: None (inferred from 54% identity to gbm:Gbem_3606)

Predicted SEED Role

"Putative transport"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YYH0 at UniProt or InterPro

Protein Sequence (276 amino acids)

>CA264_20810 transporter (Pontibacter actiniarum KMM 6156, DSM 19842)
MAEDKEAYAHEQVKEIVDSPSAQAIHDAIYKEAESELERPTSNLFWSGLAAGLSMSLSMI
VEGVLEAYLPEAEWTVLVSSFGYSMGFVIVILGKQQLFTENTLTPILPLLHDKTTEKFVN
VMRLWGVVLFANLLGTLLVALAVAHTFAFDPHVLDTFAKLGHKAMEPGFGTVLLRGVFAG
WLIALMVWLLPYAGTARVWIIILVTYVVAIGHFSHVIAGSMETFTIAAMGETTWGNVLLN
YTLPALIGNILGGVVLVAAINHLQISSGKKEGSPTQ