Protein Info for CA264_20450 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF13505: OMP_b-brl" amino acids 17 to 210 (194 residues), 33 bits, see alignment E=1e-11 PF02412: TSP_3" amino acids 217 to 235 (19 residues), 17.2 bits, see alignment (E = 5e-07) amino acids 245 to 266 (22 residues), 20.5 bits, see alignment (E = 4.8e-08) amino acids 275 to 292 (18 residues), 14.2 bits, see alignment (E = 4.2e-06) amino acids 302 to 319 (18 residues), 17.3 bits, see alignment (E = 4.5e-07) amino acids 327 to 349 (23 residues), 19.2 bits, see alignment (E = 1.2e-07) PF00691: OmpA" amino acids 373 to 467 (95 residues), 75.7 bits, see alignment E=4.6e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXD9 at UniProt or InterPro

Protein Sequence (492 amino acids)

>CA264_20450 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MRTQLSNFSRLAFALVFLLMASPGLFAQSSDQKTNLQIYGSALQYKGDITGDDGFSDLEW
GGGISLNRYLSPSFDAGLHLTYGSTEDKGEGTYSGSSFDAQMGTVMLGLRLKMYGTILKE
DAFIGPYLQVAGGGAWAKTDANAPAGGPAVHNDDKFFTMAGRAGAGIRFRFSDAVSAFVE
TNYMIMGQDKIDGYDVGDNDQFLMHNVGLGFSLGKAKDTDMDGVPDRRDDCPDTPTGVQV
DKNGCPVDTDGDGVPDYQDECPSEAGVANLNGCPDRDGDGIADKNDQCPDEAGTAATNGC
PDADNDGVADANDNCPDTPAGVQVGADGCPVDSDGDGVPDNEDACPNSAGTAATKGCPEL
DEATLKLIDEKVRFEFDKARVQDAYKQLLDSVIVALQKYPDHVLLIKGHADFIGSEEYNQ
ALSERRAEAVKEYLIQQGVQNPDRLVTKGYGETQPLVKVNERLSRRRTETARRINRRVGF
ELNTPDLQLNME