Protein Info for CA264_20270 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 310 PF01807: zf-CHC2" amino acids 3 to 76 (74 residues), 26.1 bits, see alignment E=6e-10 PF13155: Toprim_2" amino acids 206 to 293 (88 residues), 41.1 bits, see alignment E=1.9e-14

Best Hits

Predicted SEED Role

"DNA primase (EC 2.7.7.-)" in subsystem DNA-replication or Macromolecular synthesis operon (EC 2.7.7.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.7.7.-

Use Curated BLAST to search for 2.7.7.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXU9 at UniProt or InterPro

Protein Sequence (310 amino acids)

>CA264_20270 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MNIEQINSELSITDLLASQGIQPARKRGADWWYISPIRAAERTPSFKVNTHLNRWYDHGS
GEGGKVFDLALRLHRTASIREVIQLLSGHSCLSAASPAITASSMDKNNRPEHEPDKDSDT
RRLQVLASSPLEEKSRMTVYLRQRGISLRTAVPYCREVGFSINARQHSAIGFENRSGGYE
LRNPWFKGSSSPKDITFIDRGANSVCLLEGFMDFLSLLELWPHLKASASFLVLNSLTQLG
KGLEVLGRHKQVLLFLDHDPPGRKVTERLLRSELNCQDVSALYRGHKDVNAYLASGQRQA
KRHRLRLGHL