Protein Info for CA264_20060 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ribosome silencing factor RsfS

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 124 TIGR00090: ribosome silencing factor" amino acids 14 to 113 (100 residues), 106.1 bits, see alignment E=4.2e-35 PF02410: RsfS" amino acids 16 to 113 (98 residues), 110.6 bits, see alignment E=1.9e-36

Best Hits

KEGG orthology group: K09710, ribosome-associated protein (inferred from 64% identity to sli:Slin_3002)

Predicted SEED Role

"Ribosomal silencing factor RsfA (former Iojap)"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YX98 at UniProt or InterPro

Protein Sequence (124 amino acids)

>CA264_20060 ribosome silencing factor RsfS (Pontibacter actiniarum KMM 6156, DSM 19842)
MKETKVEATSDILAELVVKGMQERKASDIVVMNLKSLKNAVSDYFVIASASSDTQLDAIA
SSIEEEVHKAVGQNPWQTEGRTNKEWVLLDYVDVVAHVFLKDKREFYALEELWGDAKIKH
VESV