Protein Info for CA264_19445 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: preprotein translocase subunit SecY

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 438 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 70 to 95 (26 residues), see Phobius details amino acids 116 to 134 (19 residues), see Phobius details amino acids 143 to 164 (22 residues), see Phobius details amino acids 175 to 197 (23 residues), see Phobius details amino acids 204 to 225 (22 residues), see Phobius details amino acids 258 to 281 (24 residues), see Phobius details amino acids 301 to 321 (21 residues), see Phobius details amino acids 363 to 382 (20 residues), see Phobius details amino acids 388 to 406 (19 residues), see Phobius details TIGR00967: preprotein translocase, SecY subunit" amino acids 19 to 417 (399 residues), 391 bits, see alignment E=3.2e-121 PF00344: SecY" amino acids 70 to 406 (337 residues), 367.9 bits, see alignment E=2.3e-114

Best Hits

Swiss-Prot: 41% identical to SECY_STRCO: Protein translocase subunit SecY (secY) from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145)

KEGG orthology group: K03076, preprotein translocase subunit SecY (inferred from 73% identity to mtt:Ftrac_3052)

Predicted SEED Role

"Preprotein translocase secY subunit (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YXB6 at UniProt or InterPro

Protein Sequence (438 amino acids)

>CA264_19445 preprotein translocase subunit SecY (Pontibacter actiniarum KMM 6156, DSM 19842)
MKKFITTIKNIFAIEDLRVRILNTVFFIAIFRLGSYVVLPGVDPNRLQANTSGLFGLLDT
FLGGAFSNASIFALGIMPYISASIVLQLLTIAVPYFQKMQKEGESGRKKINQITRVLTII
ITLAQAVGFVATINAEAIAINTTLFTITSMIVLTSGTIFCMWLGEKITDKGIGNGISMLI
MIGIVSRFPGAIVAEFLSKQLNGALLFLFELIVLFFVVMSVVMLTQAIRRIPVQYAKQVG
TSSLYSGQRQFIPLKVNAAGVMPIIFAQSLMFLPSMLASIWADSSETANYIGSTFSDFTS
WQYNLVFGLLILVFTYFYTAISVNPNQIADDLKRSGGFVPGVKPGRATSEYIDAILTRIT
LPGAIYLALVAIFPSIAMLLGVTREFSQFFGGTSLIIMVGVVLDTLQQVESYLLMRHYDG
MMKSGKLRGRTENIAMVS