Protein Info for CA264_19205 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 364 PF13439: Glyco_transf_4" amino acids 13 to 166 (154 residues), 48.5 bits, see alignment E=2e-16 PF00534: Glycos_transf_1" amino acids 176 to 338 (163 residues), 117.3 bits, see alignment E=1.1e-37 PF13692: Glyco_trans_1_4" amino acids 187 to 326 (140 residues), 100.4 bits, see alignment E=2.2e-32 PF13524: Glyco_trans_1_2" amino acids 264 to 348 (85 residues), 30.5 bits, see alignment E=7.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWT0 at UniProt or InterPro

Protein Sequence (364 amino acids)

>CA264_19205 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MRILHLVSEKTWRGGEQQVAYLIEELDKQGVTNLVACRQHSAFHTYCQQQQLPHLALPFA
NEFDVVTALRVKAYSKQNKVDLMHVHSGHSHAISVLSHVLGNTLPIILSRRVDFPVKNNL
LSRLKYNYKGIKRVVCVSDKIKEVVSASLKHPELCVTVHSGVDLSRFANSKKDGKLHREF
NLPPSAPLIGNVSAIAPHKDYYTFVDTAELVLKQHPEAFFFIVGDGPLREEIKAYVQQKK
LQQSFVFTGFRNNVPQLMPELDVMLVTSETEGLGTTILDAFACQVPVVATKAGGIPEIVR
NEDTGLLAPVKSPAILAEKVHQVLTNAALRSTIIQGASKLLQEFSKENTALRTLAVYKEV
LQQV