Protein Info for CA264_19005 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1041 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 24 to 1041 (1018 residues), 654.4 bits, see alignment E=4.1e-200 PF13620: CarboxypepD_reg" amino acids 25 to 95 (71 residues), 43.6 bits, see alignment 6.3e-15 PF13715: CarbopepD_reg_2" amino acids 26 to 108 (83 residues), 67.5 bits, see alignment E=1.7e-22 PF07715: Plug" amino acids 119 to 241 (123 residues), 61.1 bits, see alignment E=2.8e-20 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 218 to 248 (31 residues), 53.4 bits, see alignment (E = 1.7e-18) PF00593: TonB_dep_Rec" amino acids 424 to 869 (446 residues), 58.7 bits, see alignment E=2.1e-19

Best Hits

KEGG orthology group: None (inferred from 53% identity to phe:Phep_0080)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWL2 at UniProt or InterPro

Protein Sequence (1041 amino acids)

>CA264_19005 SusC/RagA family TonB-linked outer membrane protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MRKVLFFGLVMLLTLVSQAWVQNRTVSGKVTDRSNGDALPGVAVLVKGTTVGTTTSVDGT
YSISLPEGSNTLVFRFIGYAVMERNVDNASVVNVALGVDTKQLQEVVVTAVGIERETKSL
GYAATKVEGEELTKARETNVVNGLAGKVSGVRITQSSGSLGGSSKVVIRGTNGFEGSNPL
FVIDGLPISNSTPSNSNSPSGNASVDYGNRAGDINPDDIESMTVLKGAAATALYGSRAKD
GAIIITTKRGAEGKVKVTLNSSTRFDNVLRLPDLQNEYAQGNYGQYNIRNTNGWGPKISE
VQDVTEKNFLGEDVTLQAYPDNVKDFFQTGMTYMNNLAFEGGSKEGDFRLSVGSTNQTGI
IENQSLDRYNVSLNAGRSFKDKLTVRTNINYVQTEAEGRPVQSSNSPNILTSAIYGLPRT
VDVNQLRDNWIDPVTGEQIALTPDKTGNNPYWIINRNNNESDVKRAYGNVILSYKPLSWL
TLSNNAGLDVYTENRFNKTSKGTFGALQGEFYKATIQNQIFNNDFIVTAERDITPDFNIK
AMAGHNIYATEVSSQSVTATNLTIDGLYDYANATSTVPGQGFSQRRIIGVWGDLGLSYKE
YLFLNVTGRNDWSSTLPVDNRSFFYPSVSAGFVFTDALNIQSSVLDYGKIRASWANVGSG
ANPYSLDYVYNPATSYFVQYSLSGTFPHGGLLGFTAPRTYPNFNLKPQNQENIEFGADFR
FLDNRIGLGVTYYDTKTSNQIVSLDVPLSTGYFARTVNVGAVLNKGFEVDLRLNPIRTSS
GFDWTTDVNFARNVQSVEDLPEGLESYGLASGWSGLQIKAEDGKSFGLYGTAWQRDPEGN
FIINAETGLREVEQGKRLGSINPDWTMGVNNTFSYKGVNLGFLVDIRKGGVFYSGTVASL
RSSGLAEETLENRGSIFIDRGVNKTKDGDFVPNTTPVQSMQDFWGRYSATANTEGNVFDA
SYVKLREVRVSYILPKAWLDKTFIGSAELGIEGRNLWIIHSNVPHIDPESNFFGAGSVGE
GVEFNTMPTTRTLGFNLRLTL