Protein Info for CA264_18700 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: cytochrome C biogenesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 865 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 51 to 71 (21 residues), see Phobius details amino acids 104 to 121 (18 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 205 to 225 (21 residues), see Phobius details amino acids 237 to 258 (22 residues), see Phobius details amino acids 277 to 294 (18 residues), see Phobius details amino acids 304 to 323 (20 residues), see Phobius details amino acids 341 to 361 (21 residues), see Phobius details amino acids 380 to 402 (23 residues), see Phobius details amino acids 431 to 451 (21 residues), see Phobius details amino acids 462 to 481 (20 residues), see Phobius details amino acids 494 to 516 (23 residues), see Phobius details amino acids 526 to 546 (21 residues), see Phobius details amino acids 821 to 841 (21 residues), see Phobius details PF01578: Cytochrom_C_asm" amino acids 102 to 324 (223 residues), 91.1 bits, see alignment E=8.4e-30

Best Hits

KEGG orthology group: K02198, cytochrome c-type biogenesis protein CcmF (inferred from 53% identity to mtt:Ftrac_2483)

Predicted SEED Role

"Cytochrome c heme lyase subunit CcmF" in subsystem Biogenesis of c-type cytochromes or Copper homeostasis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWI8 at UniProt or InterPro

Protein Sequence (865 amino acids)

>CA264_18700 cytochrome C biogenesis protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MINTLIGDIGHASVIVAFVAAIVSSYAYFMASRAKVEATGDNSWRNLARGAFYVHGAAVM
MIIFALFNIIYEHRYEYYYAWSHSSNHLPVHYMISCFWEGQEGSFLLWIFWHVLLGLALI
RGGRKDKVWEAPVMAMFSFVQLFLTSMILGVVIGDLKIGSSPFILMRDFMTDAPVFALDP
NFVPNDGTGLNPLLQNYWMVIHPPTLFLGFAATLVPFAFAMAGLWKGKFTEWVKPALPWS
HFAAVVLGIGIIMGAYWAYETLNFGGYWNWDPVENAVYIPWLVLVGAIHTMIAYRRGKSG
LKASYILVIASFLLILYATFLTRSGILGNASVHSFTDLGLSGQLFAYLAVFAVLAVALLA
YRWKSIPTTQKELATYSGEFWVFIGAIVLCLAAFQVLFTTSIPVYNSFMGFIGFESNAAL
PADQIAHYTKFQLWGGVAVAVISGIGQLLWWRKGNQGSFLDAITLPGMLTLLFASLIIVL
SKLGVLNETIDNPVYITLLVAALFSVFANLSIILNLLHKKVSLSGGAVSHIGIALMLIGI
LFSSGYSNIISQNVSGMVYSREFSDDINRDNVLLWRNSPVEMDKYSVSYHGQFQEIAGVP
GYVNRELLFPTADEYKAIARGPIKAKDKTYFETGDTLEVVSPENIYYQVQYKERDGDKSF
TLYPRAQVNPNMGLLASPDIKHFADKDLYTHVSSIPDPNEEKEWGELQEYEVTAGDTIIL
NDYVAVFNGIEPIQQVPGVALEPGDVAVQADMKIFGERKNYHAHPVLMIKDQMLGRVPEE
VADLGLRITFLNIDTENNKFKLGVNASQKDYIILKAMEKPFVNVLWIGTIVMSIGFVMAI
IRRNDEGKKKPKAAAPKEKRKVQAA