Protein Info for CA264_18695 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: glycogen synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 407 PF13579: Glyco_trans_4_4" amino acids 112 to 206 (95 residues), 43.9 bits, see alignment E=8.3e-15 PF13439: Glyco_transf_4" amino acids 112 to 210 (99 residues), 48.9 bits, see alignment E=2e-16 PF20706: GT4-conflict" amino acids 178 to 342 (165 residues), 26.3 bits, see alignment E=9.3e-10 PF00534: Glycos_transf_1" amino acids 219 to 368 (150 residues), 126.7 bits, see alignment E=1.9e-40 PF13692: Glyco_trans_1_4" amino acids 227 to 365 (139 residues), 107.2 bits, see alignment E=2.1e-34

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWH0 at UniProt or InterPro

Protein Sequence (407 amino acids)

>CA264_18695 glycogen synthase (Pontibacter actiniarum KMM 6156, DSM 19842)
MNVFVIPSWYPTQHRPHSGIFVREQAEALAQAYPGSNFAISTWGSHNPDLQLWAKDHVRN
LAKVLRHRRGQTSETKLGPNLTEYYTPAFTWSRKILRGNIDTIIKANESHLKAFEAAAGP
VDVLHAHTAYPAGWVAMHLSARYKVPYLITEHMGPFPFKDFLLRPGQLSPYLQKPLQHAA
ATVAVSPQQKETLQHWGIPHVQYIPNLTDESFFKPSPGHQKNSLPTTFFTLARLEEGKGI
RYLIQAFKLFLAAHPQCRLRIGGGGSCREEYQALVEELAIADKVEWLGVLNRESALEAYR
QCDVFVLPSLYENLPLVLLEATACGKPVIGTYCGGPASIINRNNGLLVEPGNVQELHHAL
LEIYSSYSQYDQEAIRNEFCSRYSRSVVCQQIMEAYHAAVKEHRTKV