Protein Info for CA264_18635 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: phosphoribosylglycinamide formyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 195 transmembrane" amino acids 79 to 98 (20 residues), see Phobius details PF00551: Formyl_trans_N" amino acids 7 to 187 (181 residues), 158.9 bits, see alignment E=5.8e-51 TIGR00639: phosphoribosylglycinamide formyltransferase" amino acids 7 to 191 (185 residues), 159.4 bits, see alignment E=3.8e-51

Best Hits

KEGG orthology group: K11175, phosphoribosylglycinamide formyltransferase 1 [EC: 2.1.2.2] (inferred from 57% identity to shg:Sph21_2384)

Predicted SEED Role

"Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)" in subsystem De Novo Purine Biosynthesis (EC 2.1.2.2)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 2.1.2.2

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YY98 at UniProt or InterPro

Protein Sequence (195 amino acids)

>CA264_18635 phosphoribosylglycinamide formyltransferase (Pontibacter actiniarum KMM 6156, DSM 19842)
MEPKDKKNIVIFASGSGSNAQRLLEHFEHHPEIRVAALFSNNPKAYALKRAETFHVPALL
FSRDEFYNTGKVLEQVQSFAPDLIVLAGFLWLVPLNLLRAFPNRIINIHPALLPKYGGKG
MHGMHVHTAVLQAQEPESGITIHYINEEYDKGEFILQERCPVQATDTPEELAARVLQLEH
RHLPEVVEKLLLEKA