Protein Info for CA264_18570 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 101 PF05930: Phage_AlpA" amino acids 24 to 70 (47 residues), 21.5 bits, see alignment E=1.7e-08 PF12728: HTH_17" amino acids 25 to 73 (49 residues), 51.4 bits, see alignment E=9.8e-18 TIGR01764: DNA binding domain, excisionase family" amino acids 27 to 71 (45 residues), 44.5 bits, see alignment E=7.5e-16

Best Hits

KEGG orthology group: None (inferred from 52% identity to cly:Celly_3210)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWI5 at UniProt or InterPro

Protein Sequence (101 amino acids)

>CA264_18570 DNA-binding protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MDLQQVEQRLSNIEILLLSQKTVFNFDEVAAYTGLSKSYLYKLTHTAQIPHFKPQGKHIY
FNKADIDQWLQRNPVTPVNADEIEQQAATYVALKNMGRAKA