Protein Info for CA264_18360 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: osmotically inducible protein OsmC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 135 transmembrane" amino acids 45 to 61 (17 residues), see Phobius details PF02566: OsmC" amino acids 35 to 130 (96 residues), 65.6 bits, see alignment E=2.4e-22

Best Hits

KEGG orthology group: None (inferred from 62% identity to psn:Pedsa_2730)

Predicted SEED Role

"putative stress-induced protein OsmC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWW3 at UniProt or InterPro

Protein Sequence (135 amino acids)

>CA264_18360 osmotically inducible protein OsmC (Pontibacter actiniarum KMM 6156, DSM 19842)
MATIQSVYKGNLRTSAQHLASGNSIITDAPVDNNGKGEAFSPTDLVCAALGSCMMTIMGI
VANRSNIDIEGMEIEITKVMAAEPRRISEVLLNFTMPAGKAYTAKEKAMLENAAHTCPVA
LSLHPDIKQTVSFTY