Protein Info for CA264_18260 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: NADH-quinone oxidoreductase subunit C

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

• PF00329: Complex1_30kDa
  • amino acids 32 to 159 (128 residues), 145.7 bits, E=5.2e-47
• TIGR01961: NADH (or F420H2) dehydrogenase, subunit C
  • amino acids 33 to 157 (125 residues), 124.3 bits, E=2e-40

Best Hits

KEGG orthology group: K00332, NADH dehydrogenase I subunit C [EC: 1.6.5.3] (inferred from 53% identity to sli:Slin_6042)

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain C (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

KEGG Metabolic Maps

• Oxidative phosphorylation

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3

Sequence Analysis Tools

See A0A1X9YWB7 at UniProt or InterPro

Protein Sequence (198 amino acids)

>CA264_18260 NADH-quinone oxidoreductase subunit C (Pontibacter actiniarum KMM 6156, DSM 19842)
MVFEEVRDLLVQLFGAELIQAEKADSLQPYLVIAPERLAEVCLELHDNEQTYFDFLSCVT
GLDNGPEAGTMEVAYNLYSIPYDHHLTLKVQVPRNSTADQPMPQVPTVSHIWRTADWHER
EVFDMLGIYFTNHPDMRRILCAADWEGHPLRKDYELQEYYHGIKVPFDQHNELNGFKGEP
QWIVGQPTPFSDKREKPE