Protein Info for CA264_18120 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 415 transmembrane" amino acids 21 to 46 (26 residues), see Phobius details amino acids 290 to 316 (27 residues), see Phobius details amino acids 336 to 367 (32 residues), see Phobius details amino acids 379 to 405 (27 residues), see Phobius details PF12704: MacB_PCD" amino acids 25 to 236 (212 residues), 125 bits, see alignment E=5e-40 PF02687: FtsX" amino acids 297 to 408 (112 residues), 55.3 bits, see alignment E=6.4e-19

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 60% identity to sli:Slin_4653)

Predicted SEED Role

"ABC transporter efflux protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YW77 at UniProt or InterPro

Protein Sequence (415 amino acids)

>CA264_18120 ABC transporter (Pontibacter actiniarum KMM 6156, DSM 19842)
MIYLRLIAESFRFAWQALRANLLRTILSLLGVTIGIFAIISVFTLVDSLERNVRDSMSFV
GDKVIYVEKWPWSTGGNYPWWKYFQRPEATAREFRLLQERITTSNGVAIFANKGGNTFKQ
GNNSYSDGTLMGVSYDYPKVSEVPVVDGRYFTPQEADAARNVIVIGDEVANSLFPYGSPI
GQDLKVGGQKFTVVGVIEKQGENMFGMPNMDQMGMIPYSTFSKMYDVGPSGMGSTIALKG
REDDPGLLELEYETKGVMRNIRGLRPRDEDNFAMNRPEMLQDAIGGFFDVVGLAGWVIGG
FAILVGGFGIANIMFVSVKERTNIIGIQKSLGAKNYFILFQFLFESVFLSLLGGGIGILL
VLLLTLIPQDIMKVTLSAGNIILGLGVSAVIGMLSGIIPAVLASNLDPVIAIRSK