Protein Info for CA264_18020 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 164 transmembrane" amino acids 44 to 65 (22 residues), see Phobius details amino acids 85 to 112 (28 residues), see Phobius details amino acids 127 to 147 (21 residues), see Phobius details PF02687: FtsX" amino acids 45 to 157 (113 residues), 35.2 bits, see alignment E=5.6e-13

Best Hits

Predicted SEED Role

"putative ABC transporter permease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YWF8 at UniProt or InterPro

Protein Sequence (164 amino acids)

>CA264_18020 ABC transporter permease (Pontibacter actiniarum KMM 6156, DSM 19842)
MVIALLRELSQRYNAGFVLDNRFLNEDYEQLHAAEQRVAVLSKYFAGLAMLISCLGLLGL
ATFTAERRMKEIGIRKMLGASEFSIAYLLSADFSKLVVVVILIALPVSYLVITHWLDNLA
YRIELKLWYFPGAGLLALVIAWGTVGMQAVKAASVSPTQCLKEE