Protein Info for CA264_17815 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 25 to 46 (22 residues), see Phobius details amino acids 69 to 90 (22 residues), see Phobius details amino acids 114 to 137 (24 residues), see Phobius details amino acids 158 to 177 (20 residues), see Phobius details amino acids 183 to 199 (17 residues), see Phobius details PF21088: MS_channel_1st" amino acids 163 to 200 (38 residues), 28.4 bits, see alignment 1.9e-10 PF00924: MS_channel_2nd" amino acids 202 to 267 (66 residues), 69 bits, see alignment E=4.7e-23 PF21082: MS_channel_3rd" amino acids 275 to 360 (86 residues), 45.6 bits, see alignment E=1.2e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YW39 at UniProt or InterPro

Protein Sequence (392 amino acids)

>CA264_17815 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MNWEKFVLDSSILRYEFLGNSVAEYLITAGILLFGFIFKTVLSRLLSGLMYKLGKGFWRE
ENLPEFRRLLIQPLEVLLFLVFLYLAFQVLDYPLEPSDLRDGDPFLKTFMFRTYQVFVIV
ALTWVILRFVDFVGLVFRHRAEKTVSKLDDQLVPFFKDFSKVLVVIFAFLVMLGSVFDVN
VTGLVAGLGVGGLAIAFAAKESLENLLASFTIFLDQPFMVGDLVQVGELIGVVEKIGFRS
TRIRTLEKSFVTLPNKHMIDKPLDNLTLRTFRRAKFDITLTYSTTSAQIRAITRDIQEYI
DQHPRTNQDGRIRFLNLGPHSKDVMVLYFVDTMDWNEFIDIKEEINYRIVEIVEAHGASF
AFPTQTLYLHPEEAPKEQQTTGKPHFGGTDFK