Protein Info for CA264_17410 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 410 transmembrane" amino acids 64 to 88 (25 residues), see Phobius details amino acids 114 to 138 (25 residues), see Phobius details amino acids 150 to 169 (20 residues), see Phobius details amino acids 175 to 196 (22 residues), see Phobius details amino acids 208 to 225 (18 residues), see Phobius details amino acids 231 to 249 (19 residues), see Phobius details amino acids 261 to 280 (20 residues), see Phobius details PF01694: Rhomboid" amino acids 108 to 250 (143 residues), 126 bits, see alignment E=6.7e-41

Best Hits

Predicted SEED Role

"FIG056164: rhomboid family serine protease"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YYG4 at UniProt or InterPro

Protein Sequence (410 amino acids)

>CA264_17410 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MHTQYEPQAVLAVLAELERRGVPVAQPEQLKQELLQAQEPPQPETLAQKGRGFLQVFVPK
PHYFVTPILLNLNLLVFVAGALLGVHVLDPDAARLVELGANFGPYTLTGEWWRLLTSMFL
HGGLVHLLFNMVALVNIGTQLEALVGRVQFVLAYVLCGLAGSVVSLWWTSPEVSVSVGAS
GAIFGMFGMLLMVLLLERELDWKSKRAILGNMVFVIGINLAYGMRGGIDNAAHIGGLLAG
VVFGSVLLLRSGRYITQAYGAVGNAITVAAGALVLLVWFLQIPFTGTVRYVYVMEEVGEL
ERSALEAALALDAAGDTYKPEEVLPLLEQGVRAWEASEVLLESVDDAPAGEEKRVATMLD
YVRLRKLSYQLLHDDMAAGRPLMHPKQQQMMSAISHFAAQLQGRDPREER