Protein Info for CA264_17365 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: rhomboid family intramembrane serine protease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 207 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details transmembrane" amino acids 48 to 68 (21 residues), see Phobius details amino acids 82 to 104 (23 residues), see Phobius details amino acids 113 to 133 (21 residues), see Phobius details amino acids 139 to 160 (22 residues), see Phobius details amino acids 177 to 198 (22 residues), see Phobius details PF01694: Rhomboid" amino acids 37 to 191 (155 residues), 81.1 bits, see alignment E=4.4e-27

Best Hits

KEGG orthology group: None (inferred from 51% identity to dfe:Dfer_3557)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YVW1 at UniProt or InterPro

Protein Sequence (207 amino acids)

>CA264_17365 rhomboid family intramembrane serine protease (Pontibacter actiniarum KMM 6156, DSM 19842)
MSVTIILIIITVGVSLYAWQNEGLMHSWIFQPYAVQRDNSWYRFLTSGFLHADFSHLLFN
MFTLYFFGDVVEYVFKSAYGPTTGILLYLLVYLGGIIVSDIPTYIKHRNDPPYRALGASG
GVASIVFSSILFFPTLDICLFAFLCLPGFIFGILYMMYSYFSGRRMAGNINHDAHLYGAL
YGFVLSLILVPSALPSFVDQIAGWRLF