Protein Info for CA264_17345 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 604 PF00005: ABC_tran" amino acids 27 to 190 (164 residues), 93.2 bits, see alignment E=6.9e-30 amino acids 354 to 505 (152 residues), 115.6 bits, see alignment E=8.6e-37 PF08352: oligo_HPY" amino acids 241 to 291 (51 residues), 28 bits, see alignment 6.9e-10 amino acids 557 to 599 (43 residues), 21.1 bits, see alignment 1e-07

Best Hits

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YW36 at UniProt or InterPro

Protein Sequence (604 amino acids)

>CA264_17345 ABC transporter ATP-binding protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKTTPILHVSDLRTAFSTDHGKITAVDGIAFEIYPGETVAIVGESGSGKSVTALSMLRLL
EAAGSITGGQVVFQSEELGQVDLLQLPEKQLLQLRGNEISMVFQEPMSSLNPVYTCGQQV
TEVLLLHTSLSKKQAKEHTIALFEQAKLPRPDKIYEAYPHEISGGQVQRVMIAMAMACEP
SLLIADEPTTALDVTVQARMLQLIDELRVKDNTAVLFITHDLGVVAEIADRILVMYKGKI
VEQGSVLEVFSQPQHPYTKGLLACRPTLSATPQSVLPTVSDFMEEDAQGCVLEKPLTMPK
DSLPGTVTGNSATVAGKSPNKADRPLLQVEDLKVYFPVKKSFFGRSTAYVKAVDGVSFSV
WPGETIGLVGESGCGKTTLGRSLLHLIKPSAGKVIFGGNDVALLSPAELRQSRRNLQMIF
QDPQASLNPMHTVGEAVMEPMRVHKRYASDKERRVKATELLEKVGITPGQFHCYPHVLSG
GQQQRVCIARALALQPKCLICDEAVSALDVSVQAQVLNLLNQLKQEFQITCIFITHDLSV
ARHMSDRILVMHQGRIVEQGTPEQLFFNPQQEYTRTLINAIPKGELEDIAAAQKKREQMK
AGPA