Protein Info for CA264_17010 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: helicase SNF2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 978 PF04851: ResIII" amino acids 519 to 674 (156 residues), 38.9 bits, see alignment E=1.3e-13 PF00176: SNF2-rel_dom" amino acids 523 to 800 (278 residues), 256.1 bits, see alignment E=5.8e-80 PF00271: Helicase_C" amino acids 821 to 923 (103 residues), 81.4 bits, see alignment E=8.5e-27

Best Hits

KEGG orthology group: None (inferred from 56% identity to mtt:Ftrac_2608)

Predicted SEED Role

"helicase/SNF2 family domain protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YVV0 at UniProt or InterPro

Protein Sequence (978 amino acids)

>CA264_17010 helicase SNF2 (Pontibacter actiniarum KMM 6156, DSM 19842)
MKVSTTQPFQVIYSLFEHEYLGYLFESFVVQVNSKGQLTLQHQNISAKNADEFSSRLNAE
DFKLIQLIDQVQQDAVLKRFSPKKVSPVDFFLKVYDPEKGDKALQETISHYIQCRMGKIL
ELLRHDKKTYIMGKDGEPTWKRISIAPERATVLFHFMRNTDNTHYFPTIRYAGQKLDFQY
KNAALVCYEPAWLMLNDVVYSFEKNVDGKKLQPFLNKRFIVVPRSVEENYYRKFVAPLVE
QFDVRPKGFAINDEKYEPTPYLTFSEVAAAEASAAKVNGNGDGRAERGSGLSSKILFDLS
FKYGDYMVQAQEAKRVSVSMEKTQDSYIFHKLIRDANHEKEFVKELNNRALEVRNGQAVL
EKSEAFSWLNSNLQGLEEKGFTVQQSVRSGKNYFIGEITLDVGITEKNDWFDIYGTVRFG
EFSVPFIRLKNHILTKNNEFLLPNGQVAIIPEEWFTQYIELFAFSEGEEHLTLKKHHMAL
VNDLQNGNLATVTMTRKLEKLREFETIEDQPLPAGFMGELRPYQKAGYNWLHFVQNYKFG
GCLADDMGLGKTVQTLAMLQHRKENGAESASLLVMPTSLVYNWVNEAQKFTPNLRILNYT
GTYRDKNVELFSNYDVVLTSYGIVRLDAELLKTYYFDYIILDESQAIKNPDSNTSRSVRS
LKSRHRLILTGTPVENSTMDLWSQMSFINPGLLGNQHFFRNEFLKPIEKEKDEQKTRRLH
ALIKPFILRRHKSQVAKELPEKIEHTTFCKMTEEQEHAYEETKSYYRNKILTSLEENGPG
NTQFMLLQGLTKLRQIANHPLMTDAGYEGESGKLKEVLRMTKNVVGKGHKVLIFSQFVKH
LEIIRKALDEKGITYTYLDGNTKNRHEQVERFQADESIRVFLISLKAGGVGLNLTAADYV
FILDPWWNPAVEAQAVDRAHRIGQQNTVFTYKFITKDTVEEKILALQNRKIQLVTDLIST
DETIIKSLTKEDIDSLLS