Protein Info for CA264_16715 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: flagellar motor protein MotB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 661 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF07676: PD40" amino acids 301 to 330 (30 residues), 18.5 bits, see alignment (E = 1.5e-07) amino acids 347 to 383 (37 residues), 17 bits, see alignment 4.8e-07 PF00691: OmpA" amino acids 553 to 642 (90 residues), 63 bits, see alignment E=2.8e-21

Best Hits

Predicted SEED Role

"Outer membrane lipoprotein omp16 precursor" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YVJ2 at UniProt or InterPro

Protein Sequence (661 amino acids)

>CA264_16715 flagellar motor protein MotB (Pontibacter actiniarum KMM 6156, DSM 19842)
MKCKFTLVLALVCFAASGRLPVLAQEMKQADKYFNNFEFSLALEAYEKVLEKEEPTLMVV
QRIADSYRILNNSKEAEFWYAQAITFPNADPSNFYLYAESAKRNANYAKAKQLFLEYGSK
VPAQRALANRMAASCDTAMKWMKYPEPYRLDQLKAMNSEGADFGPIRTKEGLFFSSDRME
KQQTKRNNWTGNGFIQMYFAPALSDSTWGAPEALPSVINTSYHNGPADYLEKEKTLYFTR
TQVVKKKTKGTNPDPTSWFKGSDNGTHTNRHGIYMARRKGGDKGKWQKEVAFAYNNTDEY
SIGHPAITPDGQVLYFASDMMGGFGETDIYYSERQPDGSWGKPVNAGSLINTSGRESFVS
LGADGNLYFSSDGHIGMGGLDLFKAVGPHKAWQKVENLKYPLNTSQDDFGIMMDSTGTKG
LLSSSRLSENGFDDILTFRKYQVQCTLAGEAVERIAQAGTVKTTYAPVSDALLQLIDEDT
DAVVLEAKSDEKGTFKFPVMAGKKYTIKGSKSGYLAQSLSVLPDCRYESDTVQVVFEFIR
DTPNKPIGIENIYYDLDKFDIKPAAALELDKLVQTLQDNPGVRIELSSHTDSRQTDEYNQ
VLSQLRAQSAVDYLIAKGISRDRVIARGYGESRLINGCKDGEVCSEVQHQENRRTEFKIL
K