Protein Info for CA264_16385 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DUF4271 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 transmembrane" amino acids 124 to 145 (22 residues), see Phobius details amino acids 180 to 202 (23 residues), see Phobius details amino acids 223 to 249 (27 residues), see Phobius details amino acids 261 to 282 (22 residues), see Phobius details amino acids 290 to 311 (22 residues), see Phobius details amino acids 323 to 344 (22 residues), see Phobius details PF14093: DUF4271" amino acids 130 to 343 (214 residues), 65.6 bits, see alignment E=3e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YY89 at UniProt or InterPro

Protein Sequence (347 amino acids)

>CA264_16385 DUF4271 domain-containing protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MVHREGADQLVPYVAGVHTEYNALHQWLPVTQAQPFLVAFAAPKDLCLFLNNQLIFKADS
AANYTLDLTRYSKGMEPVEGKYLFTVWHPVQQPNVNTFRNVPRVSGAAPEANQRPFSIQV
REYVNQNAFIIFILAIGLIYGLLRINYPVDFQGVFNLNGFLRTSAQSELSTAKSVGAASN
VLFVLAFSLSLALLIAAIHTNVQHIKLFNRLFPVSEADITTKIIFYTVLIFLVVLLKYVF
LKVMAFIFGLEQVVQLQYREFIRSLLFLGLFLPLVMLLYLALNAVMPEEILLISSLAVSL
VLVITTLRVYYTVNKKASVLNLHLFSYLCATEVIPLAIMLKLIVFNF