Protein Info for CA264_16360 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: gliding motility protein GldM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 530 signal peptide" amino acids 1 to 32 (32 residues), see Phobius details TIGR03517: gliding motility-associated protein GldM" amino acids 1 to 523 (523 residues), 438.7 bits, see alignment E=1.6e-135 PF12081: GldM_1st" amino acids 32 to 222 (191 residues), 128.5 bits, see alignment E=6.6e-41 PF21601: GldM_2nd" amino acids 226 to 328 (103 residues), 80.9 bits, see alignment E=1.6e-26 PF21602: GldM_3rd" amino acids 330 to 408 (79 residues), 72.9 bits, see alignment E=4.3e-24 PF12080: GldM_4th" amino acids 411 to 529 (119 residues), 55.9 bits, see alignment E=1.4e-18

Best Hits

KEGG orthology group: None (inferred from 48% identity to dfe:Dfer_2917)

Predicted SEED Role

"gliding motility-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YVH8 at UniProt or InterPro

Protein Sequence (530 amino acids)

>CA264_16360 gliding motility protein GldM (Pontibacter actiniarum KMM 6156, DSM 19842)
MAGGKETPRQKMIGMMYLVLTAMLALNVSSAILLKFQFLDESLQQVNKKTVNDNAGVVSN
IQAAIAENKTPSANDKRVLQSAKEVREKTSEMVSYIRGLREMLIDKTGGETEEGYAQPEG
NDIVAINMIGAANKNNGAAYELKDKLNAYAKFLNQYSPSTPDKLALDGSEDPVAKNDPDQ
RRKDFAQLNFEETPMVAALAVLSQKEAEVLKYEADALQKLAQQVGADIIKFEKIFAMARA
ESKTVAAGTKYKADMFIAASSDNITPKMSFQGKPVQVENGLGKVEFVASASNYDADGNSK
QTWKGQVTINQNGRDTTFTVTEEYIVAKPVIQVQSASVQALYFQCANELNIQVPALGAVY
DPSFSASGGSAIKGAKKGEVTIIPSATEVTINVSSGGNSIGSEKFKVRPIPKPEIVALVN
GKPVDVKRGIPAQSFRAVEIQAVADEGFKQLLPNEARYRVTKWRAFLVRNNQPVDQGEFN
GPTANLTSFAAKANKGDRVVIEIVDVKRLNYKGQAVDVNVGSPNFNVPLN