Protein Info for CA264_16125 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: DNA-binding response regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 247 PF00072: Response_reg" amino acids 5 to 110 (106 residues), 86.6 bits, see alignment E=1.3e-28 PF04397: LytTR" amino acids 151 to 245 (95 residues), 78.5 bits, see alignment E=3.8e-26

Best Hits

KEGG orthology group: K02477, two-component system, LytT family, response regulator (inferred from 60% identity to cpi:Cpin_6586)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YVA9 at UniProt or InterPro

Protein Sequence (247 amino acids)

>CA264_16125 DNA-binding response regulator (Pontibacter actiniarum KMM 6156, DSM 19842)
MMKCLIIDDEPLARSIVAEYLQKHPGLEVVQECGDGFEGVKAIMQHQPDLVFLDIQMPKI
NGFEMLELVEQAPGVIFTTAFDEYALKAFETNAVDYLLKPFSQERFDAAVKKWLEKQSIN
ATENKAASLGNVPAKQPEEQLRIVVKAANDIRIIPVKDVLYLEAYDDYVKVHTTEGLFLK
KKTMGYYERVLDPKQFVRVHRSYIIPLSQLTRIEPLEKDSHVALLKNGVRVPLSRSGYTK
LRAVLGI