Protein Info for CA264_15170 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: biopolymer transporter ExbD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 201 signal peptide" amino acids 1 to 38 (38 residues), see Phobius details PF02472: ExbD" amino acids 7 to 193 (187 residues), 79.5 bits, see alignment E=1.3e-26

Best Hits

KEGG orthology group: None (inferred from 52% identity to psn:Pedsa_2966)

Predicted SEED Role

"Biopolymer transport protein ExbD/TolR" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YV01 at UniProt or InterPro

Protein Sequence (201 amino acids)

>CA264_15170 biopolymer transporter ExbD (Pontibacter actiniarum KMM 6156, DSM 19842)
MPKVKVKRKNPSLDMTPMVDLFFLLVTFFMLTATARPDEAVVVDTPSSVSEIKIPDTNVI
TITVDNNNRVFFGVDGQQTKEALLDKIAGKYGVGFTAEEKKTFSLLNNFGVPVNQLKSFL
AMESGARKEVNQPGIPIDSTHNELGDWVLQTRLTNPKVVIAIKGDQDVDYATIQRVIDIL
QDRKVNRFNLITDMENKPQNL