Protein Info for CA264_14970 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: gliding motility lipoprotein GldB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 signal peptide" amino acids 1 to 19 (19 residues), see Phobius details TIGR03514: gliding motility-associated lipoprotein GldB" amino acids 9 to 330 (322 residues), 324.4 bits, see alignment E=4.6e-101

Best Hits

KEGG orthology group: None (inferred from 40% identity to sli:Slin_5539)

Predicted SEED Role

"GldB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YUP7 at UniProt or InterPro

Protein Sequence (334 amino acids)

>CA264_14970 gliding motility lipoprotein GldB (Pontibacter actiniarum KMM 6156, DSM 19842)
MYYRLLILALVVFSFGCGEKGCELPDEIAEVPVDVQIERLEQPFFAVSSKAEMADFLKNH
PVFADKYLQQDNYPSDSALISPLYGLATNPALDSLAEQAIQTFGSMQEQEQQLERAFKVI
KYYYPEYQVPQVMTFVTGLGTLGSDLFVSDSLLVFGLDYFIGPKATYRPQAYEYILQRYE
PEKMVPAAMLLLSDRFNKTGFADRTLLAEMIGIGKAYYFVQSVLPCVPDAYIMSYTEKEI
ADVSHNEGRIWAHFVEKELLFEKAPFVVNKYIGERPNTPEIDATAPGRIGAWVGWQIVRA
YMERNPEVTLPELMAETDYRKIFSESKYKPEKKR