Protein Info for CA264_14420 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF13441: Gly-zipper_YMGG" amino acids 39 to 85 (47 residues), 32.9 bits, see alignment 6.2e-12 PF13488: Gly-zipper_Omp" amino acids 46 to 90 (45 residues), 36.5 bits, see alignment 5.2e-13 PF00691: OmpA" amino acids 119 to 214 (96 residues), 81.2 bits, see alignment E=8.9e-27

Best Hits

Swiss-Prot: 37% identical to YIAD_ECOLI: Probable lipoprotein YiaD (yiaD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 53% identity to plt:Plut_1338)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YYN0 at UniProt or InterPro

Protein Sequence (236 amino acids)

>CA264_14420 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MLAATLLFSSCQTTAPVAGSGNTQTTTQAKTGEKQGMSKTTKGGLIGAGGGAVLGGLIGN
RLGNTAAGAIVGAAVGGATGAVIGRRMDKQAEELEKSMENANVERVGEAIRVNFDSGILF
AVNSAELSATAKQDIQKLAKTLQDYQGTNVIIEGHTDNTGSYELNQKLSERRAEAVASYA
RSLGVAGSRLQAKGYSYDQPIADNSTVEGRKQNRRVEIIIVANEELKQAAENGELK