Protein Info for CA264_14390 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 556 transmembrane" amino acids 6 to 23 (18 residues), see Phobius details amino acids 169 to 200 (32 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details PF00488: MutS_V" amino acids 370 to 553 (184 residues), 101.1 bits, see alignment E=3.9e-33

Best Hits

KEGG orthology group: None (inferred from 44% identity to zpr:ZPR_4587)

Predicted SEED Role

"MutS-related protein, family 1" in subsystem DNA repair, bacterial MutL-MutS system

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YUJ3 at UniProt or InterPro

Protein Sequence (556 amino acids)

>CA264_14390 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MYMSFLWILLPALALLSLLAFFLRYRGKAKKQQAEQEISAGWAKPKEGQYFNFHLIGRYF
KNRTRLGAGYFQIISHQISEDLYLDEVFKYIDRTTSRIGQQYLYYKLRAVDSDIEKLKRF
DRLVKAFLQHDAQRTQCQLLLKPLEKGDSYYFEEMLHGEPVQAPKWLPLVYVLSFAVLAL
AVLAFAFPGLLLFLLPLFIVNLLVHYWNKENINYYLIALSEFDKAYTAAGKLQEQTIVKE
HGASSDFLQALTPLKKKMRWVNFSSQFESDSTSIFYALFELLKIAFNLEILFFFSLTRSI
KAKAAPLNELFVFIGQLDAAISTASLRAGLPVCCTPTFCPPKQLNVSGLRHPLLKDCIPN
DLRLSRKSLLLTGSNMSGKTTFIRAVGLNMLLAQTLYCCTAERFEAPFSKIHTSINITDD
LLSEKSYYFEEVTTIKAFLECSQQTEPALFILDEIFKGTNTVERIAGGKAILSYLAKGNH
LVLVSTHDTELTALLTEEFALHHFSESVQGTALLFDHKIKPGPLTTRNAIKILEMSHYPE
EIIAEANRVIGAMERG