Protein Info for CA264_14260 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: NADH-quinone oxidoreductase subunit L

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 653 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 63 (22 residues), see Phobius details amino acids 93 to 115 (23 residues), see Phobius details amino acids 126 to 145 (20 residues), see Phobius details amino acids 151 to 171 (21 residues), see Phobius details amino acids 192 to 211 (20 residues), see Phobius details amino acids 222 to 242 (21 residues), see Phobius details amino acids 262 to 281 (20 residues), see Phobius details amino acids 287 to 314 (28 residues), see Phobius details amino acids 321 to 343 (23 residues), see Phobius details amino acids 347 to 347 (1 residues), see Phobius details amino acids 349 to 370 (22 residues), see Phobius details amino acids 385 to 407 (23 residues), see Phobius details amino acids 426 to 451 (26 residues), see Phobius details amino acids 472 to 494 (23 residues), see Phobius details amino acids 529 to 550 (22 residues), see Phobius details amino acids 631 to 652 (22 residues), see Phobius details TIGR01974: proton-translocating NADH-quinone oxidoreductase, chain L" amino acids 17 to 647 (631 residues), 761.4 bits, see alignment E=5.2e-233 PF00662: Proton_antipo_N" amino acids 80 to 130 (51 residues), 75.1 bits, see alignment 5e-25 PF00361: Proton_antipo_M" amino acids 148 to 437 (290 residues), 291.5 bits, see alignment E=1e-90 PF01010: Proton_antipo_C" amino acids 458 to 594 (137 residues), 29.3 bits, see alignment E=9.6e-11

Best Hits

KEGG orthology group: K00341, NADH dehydrogenase I subunit L [EC: 1.6.5.3] (inferred from 64% identity to dfe:Dfer_3898)

Predicted SEED Role

"NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3)" in subsystem Respiratory Complex I (EC 1.6.5.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.6.5.3

Use Curated BLAST to search for 1.6.5.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YUA6 at UniProt or InterPro

Protein Sequence (653 amino acids)

>CA264_14260 NADH-quinone oxidoreductase subunit L (Pontibacter actiniarum KMM 6156, DSM 19842)
MQEIVMPINNQGMALLCLLIPLLPLAGFIINGLGNRKVSKGLVSFIGCSTVLASFLITAY
LFLDFTANGSSAYVVDYYNWISVGDMRIGFSFLIDQLTLLMMLMVTGIGFFIHLYSAGYM
SHDENFGKFFAFINLFMFSMLLLVMGSNYVMMFVGWEGVGLCSYLLIGFWNKNTSYNNAA
KKAFVMNRIGDLGFLLGIFLIFITFGSVSYPQVFAEAAQYTGGIDSTVMIAITLLLFVGA
MGKSAQIPLFTWLPDAMAGPTPVSALIHAATMVTAGIYMVLRSNVLYVLAPTTLEVIAVV
GVATAVLAATIGLAQNDIKKVLAYSTVSQLGYMFLALGVMAFSSSIFHVLTHAFFKALLF
LGAGSVIHAMSNEQDIRSMGGLRKYLPITFVTFLIGTLAIAGIPPFAGFFSKDELLAHVW
EHNKLLWGLGMLASFMTSFYMFRLVFLTFFGTFRGTTEQKNHLHESPASMTIPLIVLAIL
STVGGFLGIPAVFGANHVLADYLSPIYGYARVANAAAVAPLHLDHATEWMLMGLSVAVAV
VAAIIAYVMYVSKKSVPATEGTKLSPIHNLIYHKYYIDELYDTIIIRPLMWMSSTFHRVL
DIVVVDGIVNGVGKLTMLSGRTMRYAQSGAIGFYLLVMVFSIALILFLNFFIG