Protein Info for CA264_13965 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1049 signal peptide" amino acids 1 to 41 (41 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 46 to 1049 (1004 residues), 842.2 bits, see alignment E=7.5e-257 PF13620: CarboxypepD_reg" amino acids 46 to 117 (72 residues), 49.5 bits, see alignment 9e-17 PF13715: CarbopepD_reg_2" amino acids 47 to 129 (83 residues), 69.8 bits, see alignment E=3.3e-23 PF07715: Plug" amino acids 138 to 244 (107 residues), 74.8 bits, see alignment E=1.5e-24 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 220 to 250 (31 residues), 65.2 bits, see alignment (E = 3.5e-22) PF00593: TonB_dep_Rec" amino acids 381 to 803 (423 residues), 68.6 bits, see alignment E=2e-22

Best Hits

KEGG orthology group: None (inferred from 60% identity to bvu:BVU_0038)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YUC1 at UniProt or InterPro

Protein Sequence (1049 amino acids)

>CA264_13965 SusC/RagA family TonB-linked outer membrane protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKCDFTLNLKLLTRRVRVPEVIKLALVLLAYVAVSSQVMAQSGSFSVSGRVTDAEAGVGL
PGVTVLLKGTTTATPTDAQGNYTLNLPNGSGTLVFTYIGYQSQEVPVNGKSTINVALGVD
AKALEEVVVIGYGAQRAEAVTGSVASISADEITQVPSGNITQALQGRLPGVEFSQSSSQP
GASMQIRIRGTRSISGGNDPLVVLDGIPFPGSVSDINPSDIKSIDILKDASATAIYGSRG
ANGVVLVTTKSGKAGQKPQISYNSFFGVKDVFARYDMMSGPELLALREASGPAQLEGKMG
LDEAEDIDTDWQDLLYRTGITTSHDIGISGGTEQGHYNFSAGYFKDKGVVPTQQFTRYSI
RGSFDQGLGKYVRVGINSYNNYNVTEGSNVGLYNTLSLSPLANPYNPDGTLKRVVKMPQD
DYWVYTKDRVEDLEDEWLNETRAFATYNTLYGEVQIPGVEGLKYRANLGLNYRQSRNGAY
TGRGINTADSTAVSTASLGNTVTTNWTIENLLTYDRTFAGKHNVNVVGLYSASQEQYDRS
LIAGRDIPTDAFQFYNIGRAADEIIVDPDEQIYTQWGLLSWMGRAMYSYDDRYMLSVTVR
SDGSSRLAPGHKWHTYPAVSAGWNIARESFMENVGLVDMLKLRAGYGQTSNQAITPYSTL
GLLATRPYNFGPDDFTTGYYVSQLPNPNLGWEYSKTWNYGVDFAILNNRLSGTVEYYVTD
TEDILLSLGLPPTSGVDSYTANIGSMQNKGLELSLNGVIIENANGWTWEAGVNIYGNRNK
ITSLASGSDEDKANWLFVGHPVNVIYDYEKVGLWQEGDPYRNILEPNEKDPNATLGMIKV
KYTGGYNEDGTPVRAINADDRQIMNANPDFQGGFNTRVGYKGFDLSAVAAFQSGGILNST
LYGASGYLNMLNGRRNNVAVDYWTPENTGAEYPNPASLRSGDNLKYASTLGYFDASYLKI
RTITLGYNFENNNWLGKVGIQNLRVYATAQNPFVLFSPYHKASGMDPETNSYADQNVAST
GNGVPSRLLTIGTNAPSTRNYLVGLNVTF