Protein Info for CA264_13660 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: putative DNA modification/repair radical SAM protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 421 TIGR03916: putative DNA modification/repair radical SAM protein" amino acids 6 to 416 (411 residues), 680.5 bits, see alignment E=5e-209 PF04055: Radical_SAM" amino acids 61 to 191 (131 residues), 36.4 bits, see alignment E=9.3e-13

Best Hits

KEGG orthology group: None (inferred from 66% identity to chu:CHU_0228)

Predicted SEED Role

"Biotin synthase related domain containing protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YU31 at UniProt or InterPro

Protein Sequence (421 amino acids)

>CA264_13660 putative DNA modification/repair radical SAM protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MDSRVVEKLKILADAAKYDVSCSSSGGKRKNENKGLGNSEGMGICHSYTEDGRCVSLLKI
LLTNHCIFDCAYCVTRKSNDVQRAAFTVQEVVDLTINFYRRNYIEGLFLSSGIFKNADYT
MERLVRVAKQLRQEHKFNGYIHLKTIPGASEELIKEAGLYADRLSVNIELPSEASLQQLA
PEKNYKEVLEPMGSIRQQLAQAKEEKKLFKSAPAFAPAGQSTQLIVGASAENDHQILQLS
SQLYKDYSLKRVYYSGYVPVSSDSRLPIITEPPIIRENRIYQADWLMRFYGFDAKEIVDE
LHPHLDLDIDPKLGWALRNRHVFPVELNTADYEMILRVPGIGVKSAQKIVSARRFAPLNF
EHLRQMGVVLKRAKYFVTCQTKSLQRQDFDSLAIRRKILFGEGSVRSALLTQQLDLFRQV
G