Protein Info for CA264_13535 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: AraC family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 347 PF12625: Arabinose_bd" amino acids 24 to 208 (185 residues), 137 bits, see alignment E=1.3e-43 PF12833: HTH_18" amino acids 259 to 335 (77 residues), 65.3 bits, see alignment E=7.7e-22 PF00165: HTH_AraC" amino acids 294 to 335 (42 residues), 34.7 bits, see alignment 2.2e-12

Best Hits

KEGG orthology group: None (inferred from 45% identity to sli:Slin_1128)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YU98 at UniProt or InterPro

Protein Sequence (347 amino acids)

>CA264_13535 AraC family transcriptional regulator (Pontibacter actiniarum KMM 6156, DSM 19842)
MTQEAHSLSAPSVGLLLHVLRQQGQDVGHICRQVGLDQRLVQDVNARIPVEMAQDLWRAA
VAATQDPDLALHVAEAINPTSMGTIAYVMMNAATLQESLLKLCKYQDIICGAIRTSLEVQ
GEQALVKLEVASPALQHPRHALDSELVIYKNAFPALVGQEIKYKKVLLAYPAPGNVAEHE
RIFAGAELVFNAAYSGLVFEAACLQLPVVSANAELNQLFEKYADAYLQRLFEPSTLRERV
QQEIAKQLKGEEPGINSVSRSMAISVRSLQAKLKEEGTTYQALLNEVRKEIAVQHLQDNQ
QTISDIAYLLGFAEPSVFSRSFKKWTGMPPMAYRQLCYDVPDSEQRA