Protein Info for CA264_12765 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: LmbE family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 846 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details PF02585: PIG-L" amino acids 51 to 185 (135 residues), 53 bits, see alignment E=2.5e-18

Best Hits

KEGG orthology group: None (inferred from 52% identity to hhy:Halhy_1628)

Predicted SEED Role

"FIG00930393: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YTJ4 at UniProt or InterPro

Protein Sequence (846 amino acids)

>CA264_12765 LmbE family protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKLYFSRLRTLLFTLALLACLQPLHAQVPRKPSSAQVLQELQRLNVLGSVLYVAAHPDDE
NTRLIAYLSNEKLYNTGYLAVTRGDGGQNLVGPEIREGLGIIRTQELLQARRTDGGRQFF
TRANDFGFSKNPEETFTIWDKEQVLADMVWTIRKFRPDVMITRFPPDERAGHGHHSASAI
LAEEAFQAAADPQRFPEQLKYVETWQPRRLLWNTGVWSFKSQEEFEKHGKALLKVDVGGY
NPLLGKSYGEIAAESRSMHKSQGFGASGTRGTSIEYLQHTAGDKAQQELFEGINTSWGRV
KGGEKVQQLIRKAIEGYKPSEPASVVPTLIAAKKELEKLPDSYWKRVKLEELQDVVQYAL
GLYLEVTAADFAAAPGQPVELQVEAVNRSAEPVTLQSVRYSFANTDTTLNISLKNNEPLK
YSARKVLPQSMAYSQPYWLRKPGSLGMFAVEQQQQVGLPENAPAAQAVFTLQVAGEPLQV
SVPVVHKRTDPVAGEVYRPFVVTPPVFVNLKEHVFMFAGQEPKQVQVLVKAGKDKVSGEL
RLQLPKGWRAEPAAVPFNLQNKGAEQQIAFMVYPPKKQQEAQLTAIASVDGKTYSQGLNQ
ISYSHIPAQVTFPEATAKIVKLDLQKRGQRVGYLMGAGDEIPASLQQIGYEVTLLQDENM
RLDYLKQFDAIILGVRAYNTVDRIKFYQPTLLDYVKQGGNLIVQYNTNHSLVMPGIAPYP
LQLSRDRVTVEDAEVRFLQPNHPVLNTPNKITKEDFEGWVQERGLYFPNAWDAAFTPILS
SNDPGEPARDGGLLVAKYGKGYYIYTGYSWFRELPAGVPGAYRLFSNLISLGKESPAAGE
AKSSIK