Protein Info for CA264_12630 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: RDD family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 143 transmembrane" amino acids 21 to 41 (21 residues), see Phobius details amino acids 58 to 79 (22 residues), see Phobius details amino acids 101 to 121 (21 residues), see Phobius details PF06271: RDD" amino acids 15 to 137 (123 residues), 75 bits, see alignment E=3.7e-25

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YTN8 at UniProt or InterPro

Protein Sequence (143 amino acids)

>CA264_12630 RDD family protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MQTTYTQSKNKAALADLGTRLMAFSLDVLLLLTLVAVTDFYTFSSNEQALLLKPERLLHL
LLAWLYFAGTETCACQGTLGKHLMNLRVTDAAGDRLTIKAATIRFFARPVSALMLLFRFL
TDSAYDSRRTFHDRLADSQVVER