Protein Info for CA264_12440 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: methionyl-tRNA formyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 293 PF00551: Formyl_trans_N" amino acids 1 to 166 (166 residues), 92.1 bits, see alignment E=3.7e-30 PF02911: Formyl_trans_C" amino acids 201 to 281 (81 residues), 63.1 bits, see alignment E=2.4e-21

Best Hits

KEGG orthology group: K00604, methionyl-tRNA formyltransferase [EC: 2.1.2.9] (inferred from 54% identity to txy:Thexy_1878)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.2.9

Use Curated BLAST to search for 2.1.2.9

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YTN9 at UniProt or InterPro

Protein Sequence (293 amino acids)

>CA264_12440 methionyl-tRNA formyltransferase (Pontibacter actiniarum KMM 6156, DSM 19842)
MRVVFIGTVEFSRKALLKLLELNVNVVGVVTKAKSEFNSDFANLVDVCEEQGIGYKYVNN
INHPNNVKWIEQLKPDVLFCFGWSSLLKPEVLTLAPHGVVGFHPALIPANRGRHPIIWAL
ALGLNKTGSTFFFMDEGADTGDILNQKEVLITSDDDAASLYNKIIEVALGQIEEFIPELI
SGKYKRIKQIGEGNTWRKRGKKDGEVDWRMSSKLIMNLVKALTRPYLGAHFVHNSEEYKV
WKCEVGTTEKLTNIEPGKILKIEPDRMLVKTGDGALWLTEFDEIKDIAVGQYI