Protein Info for CA264_12240 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 319 PF00005: ABC_tran" amino acids 41 to 177 (137 residues), 99.4 bits, see alignment E=2.9e-32 PF13304: AAA_21" amino acids 148 to 206 (59 residues), 40 bits, see alignment E=4.8e-14

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 51% identity to cpi:Cpin_7061)

Predicted SEED Role

"ABC transporter, ATP-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YTE1 at UniProt or InterPro

Protein Sequence (319 amino acids)

>CA264_12240 ABC transporter ATP-binding protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MLYLLRLPQRAGGLHVTPNFVSLILDIHTLSKRYGSIQAVDKLSLQVEKGSIYGLLGPNG
SGKTTTLGMVLDVIRPTSGSFSWFGQPASPATKKRVGALLETPNFYPYLTARRNLEIVAE
IKGASHSRIAEVLHLVGLSQRMHTTFKGFSLGMKQRLALASSLLNDPEVLVLDEPTNGLD
PEGIAEVRELILKIAAEGKTVILASHLLDEVEKVCTHVAVLQKGVLRAQGPVSTVLAAKD
QLVISAGDVPQVLEALRQLPFVEAFQQAERGQVLLTLQDGYGPADVNKAMFEAGIVLQQL
TLRRRSLEAQFLEIIKKQA