Protein Info for CA264_12075 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: PAS domain S-box protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1740 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details TIGR00229: PAS domain S-box protein" amino acids 421 to 546 (126 residues), 53.7 bits, see alignment 1.1e-18 amino acids 554 to 681 (128 residues), 49.9 bits, see alignment 1.6e-17 amino acids 687 to 804 (118 residues), 46.7 bits, see alignment 1.7e-16 amino acids 1099 to 1221 (123 residues), 46.8 bits, see alignment 1.5e-16 PF00989: PAS" amino acids 425 to 530 (106 residues), 34.3 bits, see alignment 1.2e-11 amino acids 560 to 671 (112 residues), 37.7 bits, see alignment 1.1e-12 amino acids 1103 to 1212 (110 residues), 35.8 bits, see alignment 4.3e-12 PF13426: PAS_9" amino acids 436 to 539 (104 residues), 43.8 bits, see alignment 1.6e-14 amino acids 574 to 673 (100 residues), 32.8 bits, see alignment 4.2e-11 amino acids 704 to 798 (95 residues), 33.3 bits, see alignment 2.9e-11 amino acids 1121 to 1214 (94 residues), 34 bits, see alignment 1.8e-11 PF08448: PAS_4" amino acids 565 to 675 (111 residues), 28.2 bits, see alignment 1.1e-09 PF08447: PAS_3" amino acids 709 to 780 (72 residues), 25.7 bits, see alignment (E = 6.8e-09) amino acids 1128 to 1209 (82 residues), 30.6 bits, see alignment 1.9e-10 PF13185: GAF_2" amino acids 820 to 963 (144 residues), 36.3 bits, see alignment E=3.9e-12 PF01590: GAF" amino acids 821 to 962 (142 residues), 26.4 bits, see alignment E=5.5e-09 PF00512: HisKA" amino acids 1236 to 1300 (65 residues), 76 bits, see alignment (E = 1.1e-24) PF02518: HATPase_c" amino acids 1347 to 1461 (115 residues), 95.3 bits, see alignment 1.9e-30 PF00072: Response_reg" amino acids 1492 to 1603 (112 residues), 95 bits, see alignment 2e-30 PF01627: Hpt" amino acids 1650 to 1728 (79 residues), 39.7 bits, see alignment 2.7e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YTB8 at UniProt or InterPro

Protein Sequence (1740 amino acids)

>CA264_12075 PAS domain S-box protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MPYIPSRLQDEKAGQLASSLLQVLVQLAKPSHGVVVALPTGQVLSANAQTINYKPTDSDF
NTTRHLRSLLGVSPERFQTILDELHQQRKYTGAVEYNATAHCSSYTYSCRMVHFQEEVFI
CVELASIGQATALLPYDGDSYHEVFEANSEPMFLLDCEGNFIDINHAASLLIKVQKEQLS
GSSIFRTFELNLFERVALKGQIQQALHTGKQKFEWWLHENNHELLPVEVTLQKGKFKGED
VLYGSVKNLNELIDSEQDIRFRNHQLEFVNQLITNLSTSDSQHEVLHNTLDELLEKSDIT
GGCVYTYSELESTAQLSYSAGQVGDTGLPEEVGFDPELIEQLHTSKRKALKRLQEHLHVH
LNRKLTVVPITTDRQVLAFILVWPGNETRMSQSFVALLDFIGTAIGNYIARHQLQKQLIR
TEDKYKMLFESSYDAILLFKDGIVVECNDKAIEFFRCTREDLIGKSPKDYSPEFQPDGQN
SVEKTERLMRDLLTTGRSVTFEWKNRRKDGTLFDTEITVNRLILDGEYYVQAFKRDITQR
KLAQQARRREEVLRESMDQFRNFLDKVNLIYYSLDKKGNIAFANNYFMKYVEYTEEEMIG
QNFYELLVPKHDRAQRLQDFHKAMETKHLSSYYERDVVTKSGQLKTIRWNCMFEYNQEGE
VTGLTSVGKDMTDKRIAMEALKDNKIRLQDLFDNAHDLIQNISVDNKFIFVNKAWKDRLG
YTDQDIESLTLNDIVHPYYKAKLIYQLRNLYKGENVNKIETVFLTKAGKPVHLIGSITCS
WQDDRPVATRAILHDITDRIKAERLQKVYYSIANLAISSKDLNSLYSAIHRELSKIIETR
NIYIALCDNEHKFLNFVYLVDQFIDKASKSQVKRPFSVGLSEYIIETGKPLYMQKQELLE
LASREGFTVHGATPEVILCSPLAIGERIIGVITLQDYQNPDAYVHTDIEILHFISNQVAL
AIERKRNEEQINTQNARLNAIFESGTHHMWSLNRHYELTSFNRNFAQAFESRNSRQLEQF
TPINDDSMVHESSYAFWEDKYKQAFAGQPQHFEIQLKYPESWREVYLNPIYLEDGSFEEV
SGIALDITDKKKSQLALAENEEKFRRIFESFQDVYYRSSLEDGTLELISPSITQLLGYEE
HEVLGQSTLLFYTNPEDQTRIRQLVAAEHTVRDIEVEMVCKDGTPKTIVLDAKLVYNEHG
VPVAMEGVARDVSELKRTQIALLTAKEEAENLLKVKTQFLANMSHELRTPMNGIIGMIDL
LSQINTDPEQSEYIDTLRKSSDALLAILNDILDLSKIQAGKLVLHESGVDLHETLDKIHS
LFVNRAQQKDLTFTYAIDPNVPRHVVTDETRLLQVLSNLTSNAIKFTNAGEVSIHVGAEQ
LDRKHFRLHVRVKDSGIGISPEGQELLFNDFTQLDNSSTKTFGGTGLGLAISRQLTHLLG
GDIGVESIPGDGSVFWFNIKVRLASTLEVEQQQLRQQQQLQEVESLTYTPYVLLVDDNQI
NQKVAQKQLERLGCITEIASNGYEAIERATTKKYNIIFMDIQMPEMDGVTATKHIKEQLG
SACPPIVAMTAYSMKDDAAKFMGQGMDDYVSKPVKSSDLHAMISKWENTTWHAAPETEEE
APDTETGEPIIDLAVVEQLKQIGGEDFTKQLYTEFEEEAAELIAEAKKELSVQHYKGILS
TLHQLKGTGFTLGINPLAELAKQLEHDIKNEHLEYIDENFSKLQMQYENYRKSYKDIIFS