Protein Info for CA264_11850 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: short-chain dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 345 signal peptide" amino acids 1 to 30 (30 residues), see Phobius details transmembrane" amino acids 319 to 337 (19 residues), see Phobius details PF08659: KR" amino acids 13 to 177 (165 residues), 54.2 bits, see alignment E=2.7e-18 PF00106: adh_short" amino acids 14 to 199 (186 residues), 151.8 bits, see alignment E=2.4e-48 PF13561: adh_short_C2" amino acids 19 to 234 (216 residues), 97.2 bits, see alignment E=1.8e-31

Best Hits

KEGG orthology group: None (inferred from 60% identity to gbm:Gbem_0291)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YT48 at UniProt or InterPro

Protein Sequence (345 amino acids)

>CA264_11850 short-chain dehydrogenase (Pontibacter actiniarum KMM 6156, DSM 19842)
MAKDTNYNSNRKGVAVITGASAGLGRACAREFAKKGYDVGLLARGKEGLEGAKREVEEMG
RKATYVQVDMADAQGVEEAANKIEQELGEIDVWVNNAMNSVFSPVKEMQPEDYKRVTEVT
YLGQVYGTLSALKRMLPRDRGSIVLVGSALAYRGIPLQSAYCGSKHAIQGFYDSLRTELI
HDKSNVKVTMVQLPAMNTTQFGFVKTRLPNKPRPMGKIYQPEVAAEVIAYAAEHERREYR
VGYPTLKAIIGNKIAPWFADYVLAKNGFKGQQTDEPEDPNRKNNLWEPIPGDHGAHGTFD
SQATYSSPQTWLSLHREKVLAGALAVGGLVLGSMLASKRKHDQYD