Protein Info for CA264_11440 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 593 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 43 to 64 (22 residues), see Phobius details amino acids 70 to 91 (22 residues), see Phobius details amino acids 119 to 145 (27 residues), see Phobius details amino acids 163 to 187 (25 residues), see Phobius details amino acids 194 to 214 (21 residues), see Phobius details amino acids 233 to 251 (19 residues), see Phobius details amino acids 273 to 294 (22 residues), see Phobius details amino acids 306 to 329 (24 residues), see Phobius details amino acids 365 to 386 (22 residues), see Phobius details amino acids 392 to 414 (23 residues), see Phobius details amino acids 421 to 440 (20 residues), see Phobius details amino acids 469 to 489 (21 residues), see Phobius details amino acids 521 to 539 (19 residues), see Phobius details amino acids 545 to 565 (21 residues), see Phobius details PF00474: SSF" amino acids 33 to 420 (388 residues), 85.2 bits, see alignment E=2.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YSY0 at UniProt or InterPro

Protein Sequence (593 amino acids)

>CA264_11440 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MNSTDLIVLVIYLAGLLVMGSIFSRLKNTQEMFAAGGQSPWWLSGLSAFMTTFSAGTFVV
WGGIAYQHGMVGVSILAVIGVASMLVGWLLAGRWKSFGYDSAAAFLDARFGRSIVQFYTW
LQGTVGVFTMGGAIYALAVIVTALIPLPADHFLADPETGHFSVTIASLLISVLVILITSG
GGLWAVLMTDALQFIILTVSVLVVVPLMLLRVGGVDGFVEKAPEGFFSLVSGEFTWFFLA
GWSLVFFFKMGGEWAYIQRFVCVPSQKDAKKSSYLFGILYLVSPLIWMLPPMAYRLIDPS
ADPEQAYILACQVVLPAGMLGLMIAAMCSATASMVTTQLNVFAGAFTTEFYQRLIRPEAD
DKELVTVGRVITLLLGGIAIAGALIIPRMGTYTGYILASVAILTGPLVLPTIWGLFSSKI
GLGTAWTVTLLSIAVGLLVKGGFQTDGWFTDIAFFAPFTKLAQLNVRMTEIVVGTAFPLA
LLLIAEVTIKKTHAGWERIQANRTRHHKAVPVTPSPLPARLCGWSTIIVGAIMLVLAVVD
QVDALILGGFAALLLLIGVGILLLAKRLERLATEKEAAIQQVQQEKELINNGW