Protein Info for CA264_10970 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: ferredoxin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 362 PF00970: FAD_binding_6" amino acids 8 to 103 (96 residues), 65.1 bits, see alignment E=1.2e-21 PF08030: NAD_binding_6" amino acids 114 to 192 (79 residues), 28.2 bits, see alignment E=3.8e-10 PF00175: NAD_binding_1" amino acids 119 to 226 (108 residues), 79.2 bits, see alignment E=7.5e-26 PF00111: Fer2" amino acids 281 to 349 (69 residues), 62.7 bits, see alignment E=5.1e-21

Best Hits

Predicted SEED Role

"Flavodoxin reductases (ferredoxin-NADPH reductases) family 1" in subsystem Anaerobic respiratory reductases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YSN8 at UniProt or InterPro

Protein Sequence (362 amino acids)

>CA264_10970 ferredoxin (Pontibacter actiniarum KMM 6156, DSM 19842)
MSSPYLNLKVVGITRETSDAATIHFEHPEKQAINYKPGQFLTLILPIEGKEIRRSYSLSS
TPHEAPRLSVTVKRVEGGLMSNYLLDTLQVGQEVKVMEPIGNFCLTCAPANQRQVLLFGA
GSGITPLMSILKAVLREEPNSRVTLLYGNRNEDSVIFKDKLQELETQYQGRLHVEYIYSQ
PTHDCDHRGRMNQSMVIKILERLQLARVQDGVYYMCGPEGMMEEVRHALDVLHVPADRIF
RESFVSNKLLEQQQQAQQHGAVVSSDEDGEITTQTVTVIYEGSEYSFVVEPDQTILEAAL
EQDIDLPYSCQAGLCTACRGKCLSGKVHLDEREGLSDAEMEEGYTLNCVGHPLTPNVVIE
IG