Protein Info for CA264_10745 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 735 PF08448: PAS_4" amino acids 30 to 153 (124 residues), 36.4 bits, see alignment E=1.6e-12 amino acids 221 to 333 (113 residues), 36 bits, see alignment E=2.1e-12 amino acids 351 to 457 (107 residues), 62.3 bits, see alignment E=1.5e-20 TIGR00229: PAS domain S-box protein" amino acids 212 to 339 (128 residues), 26.7 bits, see alignment E=2.5e-10 amino acids 342 to 462 (121 residues), 36.5 bits, see alignment E=2.4e-13 PF00989: PAS" amino acids 213 to 265 (53 residues), 24.5 bits, see alignment 6.8e-09 PF13426: PAS_9" amino acids 227 to 331 (105 residues), 24.7 bits, see alignment E=7.2e-09 PF14501: HATPase_c_5" amino acids 628 to 720 (93 residues), 24.9 bits, see alignment E=5e-09 PF02518: HATPase_c" amino acids 628 to 734 (107 residues), 80.5 bits, see alignment E=3.7e-26

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YSR9 at UniProt or InterPro

Protein Sequence (735 amino acids)

>CA264_10745 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MSDSATKPNPWQPNGVGESDNLFQVELPIFNALPGAYLLLSRELIIEAVSDTYLQATFTQ
REQLLGRYIFDVFPDNPDAPNAHAVENLRASLQQVLATGQPHEMARQQYDVPDPLNPNAF
VLRYWLPRNTPVLDAQGRVSRIIHAVVNVTENVRFQAQLAASEEREAQANAAVAEKEQAW
QQVLVLNQELDARVATRTRELQEAQQKAEWQKERMQHIFMQAPVAIGIFTGERQIVELVN
PMMCELLGRPARELLGKSIFDVVPEMVGQGFEAIFSDVYTSAVPFEAKELPATLLREGQL
ELRYYNGVYQPLKNERQEVTAVIQIVTDATEQVKSRQALETSAHQLKLITDALPVLIGYL
DKDQRYRFTNYAYKAWFHQEPEELLGRSVREVVGEKAYSGVKKYIERALAGERLNFEATM
PFREDFLKCIQATFVPDVQDGEVVGFFTLVSDITEQVEARRAVEKGKRQAQALAAELAVA
NEELRAANNEIQSTNSELSATNKQLKRINADLDNFIYTASHDLKAPILNVEGLVDALLEE
LPPESLQLEPVQHVVDLILDSVKRFKRTLEHLTEVSKFEKTQSTAPARVDLREVVADVQK
DLALAIKAAQAQIKVNVSSCPTILFSRKNLRSIVYNLLSNAIKYRSPDRAPLISIDCHET
EQCQVLSVSDNGLGMDMSQKKKLFAMFQRLHSHVEGSGVGLYMVKKIIENAGGRIEVQSK
VGEGATFQVYFPRTS