Protein Info for CA264_09975 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 115 transmembrane" amino acids 26 to 58 (33 residues), see Phobius details PF13571: DUF4133" amino acids 9 to 96 (88 residues), 113 bits, see alignment E=3.5e-37

Best Hits

KEGG orthology group: None (inferred from 56% identity to zpr:ZPR_3457)

Predicted SEED Role

"Conjugative transposon protein TraF" in subsystem Conjugative transposon, Bacteroidales

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YSA0 at UniProt or InterPro

Protein Sequence (115 amino acids)

>CA264_09975 hypothetical protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MATSVYTLHKGINRPIEFKGLKAQYIWYLGSGVIVLLLAFCLLYALGLSTFSCLGLVLPA
GAWMMRRVYRLSNTYGEHGLMKELARRRVPRLVRQTGRAVFLGSGREEQRLSNQY