Protein Info for CA264_09265 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: XRE family transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 491 PF13560: HTH_31" amino acids 12 to 66 (55 residues), 39.8 bits, see alignment 1.3e-13 PF12844: HTH_19" amino acids 15 to 72 (58 residues), 39.7 bits, see alignment 1.3e-13 PF13443: HTH_26" amino acids 16 to 66 (51 residues), 25.3 bits, see alignment 4.5e-09 PF01381: HTH_3" amino acids 16 to 70 (55 residues), 51.4 bits, see alignment 2.7e-17 PF06114: Peptidase_M78" amino acids 211 to 320 (110 residues), 28 bits, see alignment E=4.9e-10

Best Hits

KEGG orthology group: None (inferred from 44% identity to lan:Lacal_0193)

Predicted SEED Role

"FIG00552836: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YS03 at UniProt or InterPro

Protein Sequence (491 amino acids)

>CA264_09265 XRE family transcriptional regulator (Pontibacter actiniarum KMM 6156, DSM 19842)
MKLQEDVIRMIFGLKVKQLRTDKGISLTDLAASTGISVSYLNEIEKGKKHPKPSKVAVIA
DTLGVTYDYLVSLQLSKRLQPVGELLQSNILSELPLEHFGLDMSRVLDLFATAPAKLSAF
VNTLLEISRAFDLRVEQFYFSALRSYQELHDNYFDDIELEAERFMEQYGLDAESTPTYAE
LANVLQQQFGISTSTDGFEAHRELAPLRSVLVPGQPPRLLLNPSLTDHQKTFAVARELGF
QHLQLQERPYTSTWVKVRSFEEVLNNFKASYFAGALLLSQDRLVQDMQAFFALPTWQPQQ
LLQLMEKYNTSPETLLHRLTSLLPKFFNIKQLFFLRFHHEPARDSFILTKELHLSGLHNP
HASFLNEHYCRRWISLTLFEELERPEQRESLLAGVQRSSYINSDNEYLVLALAQPAESRY
NTVSIGLLVNENLRSKLRFLEDADIIIRKVNETCERCPAVDCLERAAPPVILEKQLWQEQ
VNEVLGKLAQA