Protein Info for CA264_08970 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: glycoside hydrolase family 15

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 574 PF19291: TREH_N" amino acids 4 to 142 (139 residues), 50.2 bits, see alignment E=2.1e-17 PF00723: Glyco_hydro_15" amino acids 218 to 506 (289 residues), 132 bits, see alignment E=3e-42 amino acids 521 to 561 (41 residues), 23.5 bits, see alignment 2.6e-09

Best Hits

Predicted SEED Role

"Glucoamylase (EC 3.2.1.3)" in subsystem Maltose and Maltodextrin Utilization or Trehalose Biosynthesis (EC 3.2.1.3)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.3

Use Curated BLAST to search for 3.2.1.3

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YRS3 at UniProt or InterPro

Protein Sequence (574 amino acids)

>CA264_08970 glycoside hydrolase family 15 (Pontibacter actiniarum KMM 6156, DSM 19842)
MKERETLIQGLAVIGDRRTCAYISRSGSVVWYCPRRFDAPAVFASLLDAAQGGSWRIDAP
GLAFMSRSYRNDSSVLCTRLRSSSGELEIEDYMPMNAAFHGICRSLSAAPENLRVVLSPK
PEYGMQEPQLQQKAGAVSINGALFLYASHPLRLEQHRIVCEVPAGERSWFVLSEQEQHIQ
PQALQEALAATQQEWKKVTSHITYHGPYEEEVRNSLRVLRLMTFAENGGIIAAGTTSLPE
VKGGHRNYDYRFVWLRDAAMIASALTRAGSDGEEERRFLSFICDAMQGMPEPVVPFFTLD
KAPAPEEHLLQHLQGYANSLPVRVGNDANHQLQLDAISNVLLAAKLIYNRFNTREHWELV
SYLADYLTDHWQEKDHGMWEETQKQHYTSSKVVAAVSLEFISEHSQEEAQRQRWCEAAAA
IRRFVAANCLTSEGAYAAFAGSEAVDVSAILFPIWAYTDAEAPEVLKTLEVLERDYCQQH
LFRRHLVDYSSKREGAFLAGTFWVAQYWVMRRDWQKFEQVMGAALAFMNDVGLMPEEGDP
ATGEFLGNMPQTFVHASLIGAVIDYKAAQEKEKK