Protein Info for CA264_08705 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: SusD/RagB family nutrient-binding outer membrane lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 472 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF12771: SusD-like_2" amino acids 28 to 439 (412 residues), 378.6 bits, see alignment E=4.1e-117 PF12741: SusD-like" amino acids 60 to 379 (320 residues), 153.9 bits, see alignment E=8e-49 amino acids 390 to 471 (82 residues), 65.8 bits, see alignment E=3.9e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YRJ3 at UniProt or InterPro

Protein Sequence (472 amino acids)

>CA264_08705 SusD/RagB family nutrient-binding outer membrane lipoprotein (Pontibacter actiniarum KMM 6156, DSM 19842)
MKKLIIFALACFAFTGCNKFDEELSVNPNQPSEASNTQLLANSMMYLPGTSSSPYGPLYA
QHLSETEYTDASRYNSVYFNFYNYYTGPLMNIESVLASNELDVSEGPVPNQLAMAKVLKS
YFFWHMTDRWGPLPYEQALQGKENFTPAYNSQETIYNALFTLLDEANAEMVPGVVDNDIM
YSGNPDKWRKLANTIHLLMALRLSEVAPDKAKAEFNKALEGGIMTSNADNFVYPHLSNTD
NQNYWYEVFEVLNRKWYAVSKPLVDYMKPLGDPRLGTFAEPNSQGEYVGLKYGLPGDVAN
TGEYSKKNISMLGESLRQQNSPVYLVTYAQGLFALAEAAKRGWIAGGDAVAENYYNMAIE
ASVQQWNNGEVTGLEEMMQQPEVAYDPARAMEQIGYQRWVHLFMNGYEAWAEWRRTGYPA
LEAPEDNAGRAIPLREAYPSQEAQNNSQNYKEAVQAAFNGQDDLYGRLWWDK