Protein Info for CA264_08700 in Pontibacter actiniarum KMM 6156, DSM 19842

Annotation: SusC/RagA family TonB-linked outer membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1074 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details TIGR04056: TonB-linked outer membrane protein, SusC/RagA family" amino acids 26 to 1074 (1049 residues), 617.8 bits, see alignment E=4.7e-189 PF13620: CarboxypepD_reg" amino acids 26 to 97 (72 residues), 44.2 bits, see alignment 3.1e-15 PF13715: CarbopepD_reg_2" amino acids 27 to 109 (83 residues), 70.5 bits, see alignment 1.4e-23 PF07715: Plug" amino acids 119 to 239 (121 residues), 63.5 bits, see alignment E=3.8e-21 TIGR04057: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region" amino acids 215 to 245 (31 residues), 50.8 bits, see alignment (E = 1.1e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A1X9YRK3 at UniProt or InterPro

Protein Sequence (1074 amino acids)

>CA264_08700 SusC/RagA family TonB-linked outer membrane protein (Pontibacter actiniarum KMM 6156, DSM 19842)
MRKTYLTTLLLLLVCWCGTAFAQQLTVSGTVTGAEDNFPLPGVSVIVKGTTTGVSTNADG
SYQINVPNQKAVLLFRFLGYETKEVQVGNQAVLNVQLGADNQQLKEVVVTALGITREERS
LGYSTQQVDGENLTLTKEQNVLGSLAGRVAGVQVSGSSGASMGGTQRIKIRGVNTLSGND
QPLIVIDGTPMANTNFAERSGQDYGNAIQDINPDDIESVNVLKGPAASALYGLRGQHGVI
MITTKKGAQGKVRVEYSGAYSVEKAGNFMPLQNTYGGGSTQKFSTLENGDPYVNQGADES
WGPRMDGQLVRQFYSFYPADPDYGKLTPFVPHPDNIKDFYELGHTFNNNIAVSGGGANST
FRLSFNNTSIEGVTPNTWLDRSNLGFNGAMDVSKKIKVSTSLNYAYNQAQRPGQGYDNGA
TYLTQWFQRSVDMERLKNYKYDDGSFLHWNIDNPNGAGVVSDLEPLYWNNPYFEAYENYS
QDKRDRFFGNVGLTYEVMDGLKLSGFARSDMFTQNIDTRSARGGRSLQDFSIGKYQNREM
NYEFMGQYTKYWGELSLNANVGANLLQQEYSYLYQSAEGGLSTPNFFNIAASIDRPEVSS
YLREKEVKSVYGMVSLGYKDTWFLDASLRNDNSSTLPEDNNSYWYPSISGSAVFSELVAW
SPLSFGKVRVSYAQAGSDLEPYQTSFNYAIGNTYSDEERTINTLYIPDKLNNPLIKPSFS
HSFETGLDLKFLQDRIGMNFTWYQQRNRNQILTLPVSGASGYASTVINAGLIENKGYEVA
LNAVPVAGKFTWDLGVNFSRNKSMIKELYSDGTMEINNYQIASNTYSRVTVSVNATEGQP
YGTLIGQAYMRDPDTGKILLDAQSLPLYEPNHNFGSVLPDYTGGVTNNFSYGPLSLSALV
DFQIGGQFFSWSRMLAVKTGQAVETAAMNDRGKNVRDPLSEGGGVKVTGIYGPGTIIDGE
DVSGKEVSTYVDAKSYFRTKLGTQVYEEWLYDASYVKLRELRLGYTLGSNLLSKLPFSSV
NIGLVSRNPFMIWQKAPKGLNPSELANGSEPISWLETGQLVSVRSFGLSLNVTL